miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|76865782|gb|DV156775.1|DV156775 CTTCAATCCCGGTCAAGAACAGGTGAGAACAGGGCTAGAACTCGCTGTCCTCAGATCACTACCAATTGTAATTTTCCAAT
CAGAAGACTTCAAAGATGGATTAGAATGTTCAGTTTGTTTATCTGAGATTCTCCAAGGGGAAAAGGCTAGATTGCTTCCA
AAATGTAACCATGGATTCCATGTAGATTGCATAGACATGTGGTTTCAATATCATTCAACTTGTCCTCTTTGTAGAAACTC
AGTAGCCCCAAAACTTGAAATCCCCAATTTTGATTTTGATGATTTGGAAGACAATGTTCAATCTTCAGATGATGTTTTGG
TTCCTGGGTTTTCCTCGGAATCCCCAAATTTTCCGACAAATGTGTTGTTTTGGGGAGATCAAAGTCAAGTTAGTAGTGCT
AATCAAGAAGATCAAGCAGCTTCATCATCATCATCATCTTCATCTTCAGGTAATAATCATAGAGAAAATGAAATGTTGGT
GATTGATATTCCTTTGCAAGTGAGTGAAAATTTTGGAGGAGAAGAAGAAGCAAAATCCCCAATGCCAACACAAAGATTAA
GGTCATTAAAGAGGCTTTTGAGTAGGGAAAAAAGAGTTGCTCCTAGTACTTCAACTACTTCTCCTTAATGATGTTTAATC
GAGAAAGAGTGTCTGGTTAATCTCGAACCGATGATA




Most similar to sp|Q9XF63|ATL3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis
           thaliana GN=ATL3 PE=2 SV=1
          Length = 324

 Score =  162 bits (410), Expect = 2e-39
 Identities = 95/208 (45%), Positives = 121/208 (58%), Gaps = 24/208 (11%)
 Frame = +2

Query: 2   FNPGQEQV-RTGLELAVLRSLPIVIFQSEDFKDGLECSVCLSEILQGEKARLLPKCNHGF 178
           F PGQ+ +  TGL    L SLPIV F+ +  KDGLECS+CLSE+++G+KARLLPKCNH F
Sbjct: 91  FVPGQDALSNTGLTSFELSSLPIVFFRQDSCKDGLECSICLSELVKGDKARLLPKCNHSF 150

Query: 179 HVDCIDMWFQYHSTCPLCRNSVAPKLEIPNFDFDDLEDNVQSSDDV-----LVPGFSSES 343
           HV+CIDMWFQ HSTCP+CRN+V    +  +   + + DN +++         +   S+ S
Sbjct: 151 HVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLSTSS 210

Query: 344 PNFPTNVLFWGDQSQVSSAN-----QEDQAAXXXXXXXXXGNN-HRENEMLVIDIPLQVS 505
           P FPTNVL WG Q QVS+ N     QED AA         GN   +  E +V+DI    S
Sbjct: 211 PEFPTNVLVWGRQDQVSTGNTNVGTQEDGAA---------GNGASQSQEAVVLDISDSSS 261

Query: 506 ENFG------------GEEEAKSPMPTQ 553
            N               EEEAKSPM T+
Sbjct: 262 RNHNVSSSSSSMRFIVEEEEAKSPMTTR 289